{ "_id": "6a1ef0e2b401979e7341339b", "Package": "ambiR", "Type": "Package", "Title": "Calculate AZTI’s Marine Biotic Index", "Version": "0.1.1", "Authors@R": "c( \nperson(\"Ciarán J.\", \"Murray\", ,\"cjm@niva-dk.dk\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-0260-2008\")),\nperson(\"Ángel\", \"Borja\", ,\"aborja@azti.es\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-1601-2025\")),\nperson(\"Sarai\", \"Pouso\", ,\"spouso@azti.es\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3208-9882\")),\nperson(\"Iñigo\", \"Muxika\", ,\"imuxika@azti.es\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9181-3781\")),\nperson(\"Joxe Mikel\", \"Garmendia\", ,\"jgarmendia@azti.es\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9403-1777\")),\nperson(\"Steen\", \"Knudsen\", ,\"steen.knudsen@niva-dk.dk\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-0428-9940\")),\nperson(\"GES4SEAS\", role = \"fnd\", comment = c(\"Grant Agreement 101059877 - GES4SEAS.\nThe GES4SEAS project has been approved under the HORIZON-CL6-2021-BIODIV-01-04 call:\n'Assess and predict integrated impacts of cumulative direct and indirect stressors\non coastal and marine biodiversity, ecosystems and their services'.\nFunded by the European Union. Views and opinions expressed are however\nthose of the authors only and do not necessarily reflect those of the\nEuropean Union or UK Research and Innovation. Neither the European Union\nnor the granting authority can be held responsible for them.\"))\n)", "Maintainer": "Ciarán J. Murray ", "Description": "Calculate AZTI’s Marine Biotic Index - AMBI. The included\nlist of benthic fauna species according to their sensitivity to\npollution. Matching species in sample data to the list allows\nthe calculation of fractions of individuals in the different\nsensitivity categories and thereafter the AMBI index. The\nShannon Diversity Index H' and the Danish benthic fauna quality\nindex DKI (Dansk Kvalitetsindeks) can also be calculated, as\nwell as the multivariate M-AMBI index. Borja, A., Franco, J.,\nPérez, V. (2000) \"A marine biotic index to establish the\necological quality of soft bottom benthos within European\nestuarine and coastal environments\"\n.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "Config/testthat/edition": "3", "RoxygenNote": "7.3.3", "Roxygen": "list(markdown = TRUE)", "URL": "https://niva-denmark.github.io/ambiR/,\nhttps://github.com/niva-denmark/ambiR/,\nhttps://github.com/NIVA-Denmark/ambiR", "BugReports": "https://github.com/NIVA-Denmark/ambiR/issues", "Config/Needs/website": "rmarkdown", "VignetteBuilder": "knitr", "Language": "en-GB", "Repository": "https://niva-denmark.r-universe.dev", "Date/Publication": "2025-12-20 11:54:28 UTC", "RemoteUrl": "https://github.com/niva-denmark/ambir", "RemoteRef": "HEAD", "RemoteSha": "4e75b9ce5143fd8ea8b0108d9eba206b75ce0a95", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-19 08:20:17 UTC", "User": "root" }, "Author": "Ciarán J. Murray [aut, cre, cph] (ORCID:\n),\nÁngel Borja [aut] (ORCID: ),\nSarai Pouso [aut] (ORCID: ),\nIñigo Muxika [aut] (ORCID: ),\nJoxe Mikel Garmendia [aut] (ORCID:\n),\nSteen Knudsen [ctb] (ORCID: ),\nGES4SEAS [fnd] (Grant Agreement 101059877 - GES4SEAS. The GES4SEAS\nproject has been approved under the HORIZON-CL6-2021-BIODIV-01-04\ncall: 'Assess and predict integrated impacts of cumulative direct\nand indirect stressors on coastal and marine biodiversity,\necosystems and their services'. Funded by the European Union.\nViews and opinions expressed are however those of the authors only\nand do not necessarily reflect those of the European Union or UK\nResearch and Innovation. Neither the European Union nor the\ngranting authority can be held responsible for them.)", "MD5sum": "915a560b5c1182e56907598623deb061", "_user": "niva-denmark", "_type": "src", "_file": "ambiR_0.1.1.tar.gz", "_fileid": "c45c4023b37f1666f21a3af27e08adedd23c25564988883c77a6806adecf1541", "_filesize": 894859, "_sha256": "c45c4023b37f1666f21a3af27e08adedd23c25564988883c77a6806adecf1541", "_created": "2026-05-19T08:20:17.000Z", "_published": "2026-06-02T15:04:02.218Z", "_distro": "noble", "_jobs": [ { "job": 79102266082, "time": 149, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7078391155" }, { "job": 79102266350, "time": 157, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7078393607" }, { "job": 79102266333, "time": 189, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7078394727" }, { "job": 79102266221, "time": 202, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7078396721" }, { "job": 79102264615, "time": 195, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7078341374" }, { "job": 79102264842, "time": 186, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7361557279" }, { "job": 79102266222, "time": 103, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7078376130" }, { "job": 79102266178, "time": 117, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7078380451" }, { "job": 79102266248, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7078373560" } ], "_buildurl": "https://github.com/r-universe/niva-denmark/actions/runs/26085045834", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/niva-denmark/ambir", "_commit": { "id": "4e75b9ce5143fd8ea8b0108d9eba206b75ce0a95", "author": "Ciarán Murray ", "committer": "Ciarán Murray ", "message": "fixing release version number\n", "time": 1766231668 }, "_maintainer": { "name": "Ciarán J. Murray", "email": "cjm@niva-dk.dk", "login": "ciaran-dk", "orcid": "0000-0003-0260-2008", "description": "Research Scientist.\nIndicator-based status assessment tools for eutrophication, biodiversity and hazardous substances.", "uuid": 11943443 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "usethis", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "scales", "role": "Suggests" } ], "_owner": "niva-denmark", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-22", "n": 5 }, { "week": "2025-49", "n": 8 }, { "week": "2025-50", "n": 7 }, { "week": "2025-51", "n": 7 } ], "_tags": [ { "name": "v0.1.1", "date": "2025-12-16" } ], "_stars": 0, "_contributors": [ { "user": "ciaran-dk", "count": 95, "uuid": 11943443 } ], "_userbio": { "uuid": 18416441, "type": "organization", "name": "NIVA Denmark", "description": "NIVA Denmark Water Research - 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